Andreas Tilevik

Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis

Mahnaz Irani Shemirani, Diana Tilevik, Andreas Tilevik, Sanja Jurcevic, Dimitrios Arnellos, Helena Enroth, Anna-Karin Pernestig

BMC Infectious Diseases

2023. Article. https://doi.org/10.1186/s12879-022-07977-0 Open Access

Diversity of respiratory parameters and metabolic adaptation to low oxygen tension in mesenchymal stromal cells

Kim Olesen, Noah Moruzzi, Ivana Bulatovic, Clifford Folmes, Ryounghoon Jeon, Ulrika Felldin, Andre Terzic, Oscar E. Simonson, Katarina Le Blanc, Cecilia Österholm, Per-Olof Berggren, Thomas Schiffer, Sergey Rodin, Andreas Tilevik, Karl-Henrik Grinnemo

Metabolism Open

2022. Article. https://doi.org/10.1016/j.metop.2022.100167 Open Access

Single-cell RNA sequencing analyses: interference by the genes that encode the B-cell and T-cell receptors

Timothy Sundell, Kristoffer Grimstad, Alessandro Camponeschi, Andreas Tilevik, Inger Gjertsson, Inga-Lill Mårtensson

Briefings in Functional Genomics & Proteomics

2022. Article. https://doi.org/10.1093/bfgp/elac044 Open Access

Sequence-based genotyping of extra-intestinal pathogenic Escherichia coli isolates from patients with suspected community-onset sepsis, Sweden

Diana Tilevik, Anna-Karin Pernestig, Magnus Fagerlind, Andreas Tilevik, Lars Ljungström, Markus Johansson, Helena Enroth

Microbial Pathogenesis

2022. Article. https://doi.org/10.1016/j.micpath.2022.105836 Open Access

Spatiotemporal extracellular matrix modeling for in situ cell niche studies

Kim Olesen, Sergey Rodin, Wing Cheung Mak, Ulrika Felldin, Cecilia Österholm, Andreas Tilevik, Karl-Henrik Grinnemo

Stem Cells

2021. Article. https://doi.org/10.1002/stem.3448 Open Access

Genotypic Characterization of Clinical Klebsiella spp. Isolates Collected From Patients With Suspected Community-Onset Sepsis, Sweden

Patricia Saxenborn, John Baxter, Andreas Tilevik, Magnus Fagerlind, Fredrik Dyrkell, Anna-Karin Pernestig, Helena Enroth, Diana Tilevik

Frontiers in Microbiology

2021. Article. https://doi.org/10.3389/fmicb.2021.640408 Open Access

A cell topography-based mechanism for ligand discrimination by the T cell receptor

Ricardo A. Fernandes, Kristina A. Ganzinger, Justin C. Tzou, Peter Jönsson, Steven F. Lee, Matthieu Palayret, Ana Mafalda Santos, Alexander R. Carr, Aleks Ponjavic, Veronica T. Chang, Charlotte Macleod, B. Christoffer Lagerholm, Alan E. Lindsay, Omer Dushek, Andreas Tilevik et al.

Proceedings of the National Academy of Sciences of the United States of America

2019. Article. https://doi.org/10.1073/pnas.1817255116 Open Access

Comparison of Whole Genome Sequencing Pipelines for Analysis of Staphylococcus aureus Isolates from Sepsis Patients

Mahnaz Irani Shemirani, Andreas Tilevik, Diana Tilevik, Anna-Karin Pernestig, Helena Enroth

14th Annual Workshop in Systems Biology, University of Skövde, Sweden, 21 November 2019

2019. Conference paper, poster.

Clinical use of 16SrRNA Ion TorrentNext-generation sequencing and bioinformatics pipeline

Alexander Kokkonen, Diana Tilevik, Anna-Karin Pernestig, Andreas Tilevik, Magnus Fagerlind, Helena Enroth

14th Annual Workshop in Systems Biology, University of Skövde, Sweden, 21 November 2019

2019. Conference paper, poster.

Using next-generation sequencing to study biodiversity in Klebsiella spp. isolated from patients with suspected sepsis

Diana Tilevik, Patricia Saxenborn, Andreas Tilevik, Magnus Fagerlind, Zelmina Lubovac-Pilav, Anna-Karin Pernestig, Helena Enroth

29th European Congress of Clinical Microbiology and Infectious Diseases, ECCMID, Amsterdam, Netherlands, 13-16 April, 2019

2019. Conference paper, poster. Open Access

Correlation and cluster analysis of immunomodulatory drugs based on cytokine profiles

Fredrik K. Wallner, Malin Hultquist Hopkins, Nina Woodworth, Therese Lindvall Bark, Peter Olofsson, Andreas Tilevik

Pharmacological Research

2018. Article. https://doi.org/10.1016/j.phrs.2017.10.012 Open Access

In situ and in silico kinetic analyses of programmed cell death-1 (PD-1) receptor, programmed cell death ligands, and B7-1 protein interaction network

Kaitao Li, Xiaoxiao Cheng, Andreas Tilevik, Simon J. Davis, Cheng Zhu

Journal of Biological Chemistry

2017. Article. https://doi.org/10.1074/jbc.M116.763888 Open Access

Cytokine correlation analysis based on drug perturbation

Fredrik K. Wallner, Malin Hultqvist Hopkins, Therese Lindvall, Peter Olofsson, Andreas Tilevik

Cytokine

2017. Article. https://doi.org/10.1016/j.cyto.2016.10.015

Structure and Interactions of the Human Programmed Cell Death 1 Receptor

Xiaoxiao Cheng, Vaclav Veverka, Anand Radhakrishnan, Lorna C. Waters, Frederick W. Muskett, Sara H. Morgan, Jiandong Huo, Chao Yu, Edward J. Evans, Alasdair J. Leslie, Meryn Griffiths, Colin Stubberfield, Robert Griffin, Alistair J. Henry, Andreas Jansson et al.

Journal of Biological Chemistry

2013. Article. https://doi.org/10.1074/jbc.M112.448126 Open Access

Toward Quantifying the Thymic Dysfunctional State in Mouse Models of Inflammatory Bowel Disease

Andreas Jansson, Anna-Karin Pernestig, Patric Nilsson, Mats Jirstrand, Elisabeth Hultgren Hornquist

Inflammatory Bowel Diseases

2013. Article, review. https://doi.org/10.1097/MIB.0b013e3182802c58

A Quantitative Study of the Mechanisms behind Thymic Atrophy in G alpha i2-Deficient Mice during Colitis Development

Kristina Elgbratt, Andreas Jansson, Elisabeth Hultgren-Hornquist

PLOS ONE

2012. Article. https://doi.org/10.1371/journal.pone.0036726 Open Access

Dynamic modelling of cell death during biofilm development

Magnus G. Fagerlind, Jeremy S. Webb, Nicolas Barraud, Diane McDougald, Andreas Jansson, Patric Nilsson, Mikael Harlen, Staffan Kjelleberg, Scott A. Rice

Journal of Theoretical Biology

2012. Article. https://doi.org/10.1016/j.jtbi.2011.10.007

Global transcriptional profiling reveals similarities and differences between human stem cell-derived cardiomyocyte clusters and heart tissue

Jane Synnergren, Caroline Améen, Andreas Jansson, Peter Sartipy

Physiological Genomics

2012. Article. https://doi.org/10.1152/physiolgenomics.00118.2011

The T Cell Receptor Triggering Apparatus Is Composed of Monovalent or Monomeric Proteins

John R. James, James McColl, Marta I. Oliveira, Paul D. Dunne, Elizabeth Huang, Andreas Jansson, Patric Nilsson, David L. Sleep, Carine M. Goncalves, Sara H. Morgan, James H. Felce, Robert Mahen, Ricardo A. Fernandes, Alexandre M. Carmo, David Klenerman et al.

Journal of Biological Chemistry

2011. Article. https://doi.org/10.1074/jbc.M111.219212

Kinetic proofreading and the search for nonself-peptides

Andreas Jansson

Self/Nonself

2011. Article. https://doi.org/10.4161/self.2.1.15362

Quantitative analysis predicts the relative therapeutic efficacy of different forms of CTLA4Ig

Andreas Jansson, Simon J. Davis

Molecular Immunology

2011. Article. https://doi.org/10.1016/j.molimm.2011.09.021

A Mathematical Framework for Analyzing T Cell Receptor Scanning of Peptides

Andreas Jansson