Angelica Lindlöf

The Vulnerability of the Developing Brain: Analysis of Highly Expressed Genes in Infant C57BL/6 Mouse Hippocampus in Relation to Phenotypic Annotation Derived From Mutational Studies

Angelica Lindlöf

Bioinformatics and Biology Insights

2022. Article. https://doi.org/10.1177/11779322211062722 Open Access

A systems biology study unveils the association between a melatonin biosynthesis gene, O-methyl transferase 1 (OMT1) and wheat (Triticum aestivum L.) combined drought and salinity stress tolerance

Roohollah Shamloo-Dashtpagerdi, Massume Aliakbari, Angelica Lindlöf, Sirus Tahmasebi

Planta

2022. Article. https://doi.org/10.1007/s00425-022-03885-4

Rubisco activase A (RcaA) is a central node in overlapping gene network of drought and salinity in Barley (Hordeum vulgare L.) and may contribute to combined stress tolerance

Massume Aliakbari, Stephen P. Cohen, Angelica Lindlöf, Roohollah Shamloo-Dashtpagerdi

Plant physiology and biochemistry (Paris)

2021. Article. https://doi.org/10.1016/j.plaphy.2021.02.016

Low DLG2 gene expression, a link between 11q-deleted and MYCN-amplified neuroblastoma, causes forced cell cycle progression, and predicts poor patient survival

Simon Keane, Sophie Améen, Angelica Lindlöf, Katarina Ejeskär

Cell Communication and Signaling

2020. Article. https://doi.org/10.1186/s12964-020-00553-6 Open Access

Plausible association between drought stress tolerance of barley (Hordeum vulgare L.) and programmed cell death via MC1 and TSN1 genes

Roohollah Shamloo-Dashtpagerdi, Angelica Lindlöf, Massume Aliakbari, Hadi Pirasteh-Anosheh

Physiologia Plantarum

2020. Article. https://doi.org/10.1111/ppl.13102

LOS2 gene plays a potential role in barley (Hordeum vulgare L.) salinity tolerance as a hub gene

Roohollah Shamloo-Dashtpagerdia, Angelica Lindlöf, Ali Niazi, Hadi Pirasteh-Anosheh

Molecular breeding

2019. Article. https://doi.org/10.1007/s11032-019-1026-z

Comparative Transcriptomics of Sijung and Jumli Marshi Rice during Early Chilling Stress Imply Multiple Protective Mechanisms

Angelica Lindlöf, Aakash Chawade, Per Sikora, Olof Olsson

PLOS ONE

2015. Article. https://doi.org/10.1371/journal.pone.0125385 Open Access

A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: Application to Arabidopsis: Application to Arabidopsis

Roohollah Shamloo-Dashtpagerdi, Hooman Razi, Massumeh Aliakbari, Angelica Lindlöf, Mahdi Ebrahimi, Esmaeil Ebrahimie

Journal of Theoretical Biology

2015. Article. https://doi.org/10.1016/j.jtbi.2014.09.038

miREC: a database of miRNAs involved in the development of endometrial cancer

Benjamin Ulfenborg, Sanja Jurcevic, Angelica Lindelöf, Karin Klinga-Levan, Björn Olsson

BMC Research Notes

2015. Article. https://doi.org/10.1186/s13104-015-1052-9 Open Access

A systems biology view of the spliceosome component Phf5a in relation to estrogen and cancer

Rishu Vallabhu, Eva Falck, Angelica Lindlöf

Journal of Computer Science and Systems Biology

2014. Article. https://doi.org/10.4172/jcsb.1000156 Open Access

Global expression profiling of low temperature induced genes in the chilling tolerant japonica rice jumli marshi

Aakash Chawade, Angelica Lindlöf, Björn Olsson, Olof Olsson

PLOS ONE

2013. Article. https://doi.org/10.1371/journal.pone.0081729 Open Access

Comparative analysis of expressed sequence tags (ESTs) from Triticum monococcum shoot apical meristem at vegetative and reproductive stages

Roohollah Shamloo-Dashtpagerdi, Hooman Razi, Angelica Lindlöf, Ali Niazi, Ali Dadkhodaie, Esmaeil Ebrahimie

Genes and Genomics

2013. Article. https://doi.org/10.1007/s13258-013-0091-7

How to Choose a Normalization Strategy for miRNA Quantitative Real-Time (qPCR) Arrays

Ameya Deo, Jessica Carlsson, Angelica Lindlöf

Journal of Bioinformatics and Computational Biology

2011. Article. https://doi.org/10.1142/S0219720011005793

Expression of the forkhead transcription factor FOXL2 correlates with good prognosis in breast cancer patients treated with tamoxifen

Pia Wegman, Anna Göthlin Eremo, Angelica Lindlöf, Mats Karlsson, Olle Stål, Sten Wingren

International Journal of Oncology

2011. Article. https://doi.org/10.3892/ijo.2011.923

Interplay between low-temperature pathways and light reduction

Angelica Lindlöf

Plant Signalling & Behavior

2010. Article, review. https://doi.org/10.4161/psb.5.7.11701

Over-represented promoter motifs in abiotic stress-induced DREB genes of rice and sorghum and their probable role in regulation of gene expression

Amrita Srivasta, Sameet Mehta, Angelica Lindlöf, Sujata Bhargava

Plant Signalling & Behavior

2010. Article. https://doi.org/10.4161/psb.5.7.11769 Open Access

In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control

Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Olof Olsson, Björn Olsson

Bioinformatics

2009. Article. https://doi.org/10.1093/bioinformatics/btp172

In the quest for a cold tolerant variety: gene expression profile analysis of cold stressed oat and rice

Angelica Lindlöf

2008. Doctoral thesis.

Evaluation of combining several statistical methods with a flexible cutoff for identifying differentially expressed genes in pairwise comparison of EST sets

Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Olof Olsson, Björn Olsson

Bioinformatics and Biology Insights

2008. Article. Open Access

Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors

Aakash Chawade, Marcus Bräutigam, Angelica Lindlöf, Olof Olsson, Björn Olsson

BMC Genomics

2007. Article. https://doi.org/10.1186/1471-2164-8-304 Open Access

Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis through Comparative Analysis of Multiple EST sets

Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson

Bioinformatics Research and Development: First International Conference, BIRD 2007 Berlin, Germany, March 12-14, 2007 Proceedings

2007. Conference paper. https://doi.org/10.1007/978-3-540-71233-6_5

Development of a Swedish winter oat with gene technology and molecular breeding

Marcus Bräutigam, Aakash Chawade, Gokarna Gharti-Chhetri, Angelica Lindlöf, Anders Jonsson, Björn Olsson, Olof Olsson, Rickard Jonsson

Sveriges utsädesförenings tidskrift

2006. Article.

Identification of Cold Induced Genes in Oat (Avena sativa) and Related Species through Comparative Analysis of Multiple EST Sets

Angelica Lindlöf

2006. Licentiate thesis.

Automated text analysis of biomedical abstracts applied to the extraction of signaling pathways involved in plant cold-adaptation

Björn Olsson, Barbara Gawronska, Björn Erlendsson, Angelica Lindlöf, Elzbieta Dura

Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure: Volume 3

2006. Conference paper.

Generation and analysis of 9792 EST sequences from cold acclimated oat, Avena sativa

Marcus Bräutigam, Angelica Lindlöf, Shakhira Zakhrabetkova, Gokarna Gharti-Chhetri, Björn Olsson, Olof Olsson

BMC Plant Biology

2005. Article. https://doi.org/10.1186/1471-2229-5-18 Open Access

Simulations of simple artificial genetic networks reveal features in the use of Relevance Networks

Angelica Lindlöf, Zelmina Lubovac

In Silico Biology

2005. Article.

Exploring protein networks with a semantic similarity measure across Gene Ontology

Zelmina Lubovac, Jonas Gamalielsson, Björn Olsson, Angelica Lindlöf

Proceedings of the 8th Joint Conference on Information Sciences, Vols 1-3

2005. Conference paper.

Gene identification through large-scale EST sequence processing

Angelica Lindlöf

Applied Bioinformatics

2003. Article, review.

Genetic network inference: the effects of preprocessing

Angelica Lindlöf, Björn Olsson

Biosystems (Amsterdam. Print)

2003. Article. https://doi.org/10.1016/S0303-2647(03)00164-3

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