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    University of Skövde, link to startpage

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      University of Skövde, link to startpage

      Benjamin Ulfenborg

      Associate Senior Lecturer in Bioinformatics
      School of Bioscience
      Room G2246
      Benjamin Ulfenborg, associate senior lecturer in bioinformatics. Teaches on basic, advanced and research level, mainly in bioinformatics. Participates in several research projects carried out by the research group TransBiG at the university and in external collaborations.

      Teaching

      Research

      During by post-graduate studies, I developed new bioinformatics algorithms and tools for discovery of biomarkers for endometrial cancer. This research was carried out as a collaboration between the University of Skövde and Örebro University. I obtained my PhD degree in 2016 and started a post doc in the TransBiG research group, where I worked with algorithm development and large-scale data analysis to increase mechanistic understanding of stem cell differentiation, and stem cell-based in vitro models. In 2018 I became associate senior lecturer in bioinformatics and have since then been involved in several research projects, both at the university and externally.

      The aims of my research are to develop powerful bioinformatics algorithms and tools for discovery of biomarkers, and to increase understanding of how biological processer are regulated. I have a particular interest in integration of different types of data and in machine learning. Examples of tools I have published are the R-packages Miodin for integration of multi-omics data and MAsC for clustering of large-scale data.

      Education

      Programme Coordinator

      Programme
      60 credits
      Master's (2nd cycle)
      Programme
      120 credits
      Master's (2nd cycle)

      Research

      2021

      Maria Lycke, Benjamin Ulfenborg, Jacob Malchau Lauesgaard, Björg Kristjansdottir, Karin Sundfeldt

      Clinical Chemistry and Laboratory Medicine

      2021. Article. https://doi.org/10.1515/cclm-2021-0510

      Benjamin Ulfenborg, Alexander Karlsson, Maria Riveiro, Christian X. Andersson, Peter Sartipy, Jane Synnergren

      Journal of Biotechnology

      2021. Article. https://doi.org/10.1016/j.jbiotec.2020.12.002 Open Access

      2020

      Gustav Holmgren, Benjamin Ulfenborg, Annika Asplund, Karin Toet, Christian X. Andersson, Ann Hammarstedt, Roeland Hanemaaijer, Barbara Küppers-Munther, Jane Synnergren

      International Journal of Molecular Sciences

      2020. Article. https://doi.org/10.3390/ijms21020469 Open Access

      Markus Johansson, Benjamin Ulfenborg, Christian X. Andersson, Sepideh Heydarkhan-Hagvall, Anders Jeppsson, Peter Sartipy, Jane Synnergren

      Biology open

      2020. Article. https://doi.org/10.1242/bio.052381 Open Access

      Maria Lycke, Benjamin Ulfenborg, Björg Kristjansdottir, Karin Sundfeldt

      Journal of Clinical Medicine

      2020. Article. https://doi.org/10.3390/jcm9020299 Open Access

      2019

      Simonas Marcišauskas, Benjamin Ulfenborg, Björg Kristjansdottir, Sofia Waldemarson, Karin Sundfeldt

      Journal of Proteomics

      2019. Article. https://doi.org/10.1016/j.jprot.2019.01.017

      2018

      Barbara Küppers-Munther, A. Asplund, Benjamin Ulfenborg, Jane Synnergren, A. Abadie

      Human Gene Therapy

      2018. Article, meeting abstract. https://doi.org/10.1089/hum.2018.29077.abstracts

      2017

      Nidal Ghosheh, Barbara Küppers-Munther, Annika Asplund, Josefina Edsbagge, Benjamin Ulfenborg, Tommy B. Andersson, Petter Björquist, Christian X. Andersson, Helena Carén, Stina Simonsson, Peter Sartipy, Jane Synnergren

      Physiological Genomics

      2017. Article. https://doi.org/10.1152/physiolgenomics.00007.2017 Open Access

      Benjamin Ulfenborg, Alexander Karlsson, Maria Riveiro, Caroline Améen, Karolina Åkesson, Christian X. Andersson, Peter Sartipy, Jane Synnergren

      April 2017 - March 2020 Systems Biology
      October 2015 - September 2019 Systems Biology
      October 2017 - May 2022 Systems Biology
      October 2015 - September 2018 Systems Biology
      April 2019 - September 2021 Systems Biology
      October 2017 - May 2022 Systems Biology
      October 2017 - May 2022 Systems Biology
      October 2020 - September 2024 Systems Biology
      October 2015 - September 2019 Informatics
      Published: 1/9/2020
      Edited: 1/9/2020
      Responsible: webmaster@his.se