Benjamin Ulfenborg

Characterization of methylation patterns associated with lifestyle factors and vitamin D supplementation in a healthy elderly cohort from Southwest Sweden

Maria Araceli Diaz Cruz, Benjamin Ulfenborg, Peter Blomstrand, Maria Faresjö, Fredrik Ståhl, Sandra Karlsson

Scientific Reports

2022. Artikel. https://doi.org/10.1038/s41598-022-15924-x Open Access

Diagnostic potential of nanoparticle aided assays for MUC16 and MUC1 glycovariants in ovarian cancer

Shruti Jain, Nimrah Nadeem, Benjamin Ulfenborg, Maria Mäkelä, Shamima Afrin Ruma, Joonas Terävä, Kaisa Huhtinen, Janne Leivo, Björg Kristjansdottir, Kim Pettersson, Karin Sundfeldt, Kamlesh Gidwani

International Journal of Cancer

2022. Artikel. https://doi.org/10.1002/ijc.34111 Open Access

Multi-Omics Characterization of a Human Stem Cell-Based Model of Cardiac Hypertrophy

Markus Johansson, Benjamin Ulfenborg, Christian X. Andersson, Sepideh Heydarkhan-Hagvall, Anders Jeppsson, Peter Sartipy, Jane Synnergren

Life

2022. Artikel. https://doi.org/10.3390/life12020293 Open Access

Human intracardiac SSEA4+CD34 cells show features of cycling, immature cardiomyocytes and are distinct from Side Population and C-kit+CD45- cells

Mikael Sandstedt, Kristina Vukusic, Benjamin Ulfenborg, Marianne Jonsson, Lillemor Mattsson Hultén, Göran Dellgren, Anders Jeppsson, Jane Synnergren, Joakim Sandstedt

PLOS ONE

2022. Artikel. https://doi.org/10.1371/journal.pone.0269985 Open Access

Multimodal deep learning for biomedical data fusion: a review

Sören Richard Stahlschmidt, Benjamin Ulfenborg, Jane Synnergren

Briefings in Bioinformatics

2022. Artikel, forskningsöversikt. https://doi.org/10.1093/bib/bbab569 Open Access

Unraveling the Metabolic Derangements Occurring in Non-infarcted Areas of Pig Hearts With Chronic Heart Failure

Cláudia Correia, Qing-Dong Wang, Gunilla Linhardt, Leif G. Carlsson, Benjamin Ulfenborg, Anna Walentinsson, Katarina Rydén-Markinhutha, Margareta Behrendt, Johannes Wikström, Peter Sartipy, Karin Jennbacken, Jane Synnergren

Frontiers in Cardiovascular Medicine

2021. Artikel. https://doi.org/10.3389/fcvm.2021.753470 Open Access

Consideration should be given to smoking, endometriosis, renal function (eGFR) and age when interpreting CA125 and HE4 in ovarian tumor diagnostics

Maria Lycke, Benjamin Ulfenborg, Jacob Malchau Lauesgaard, Björg Kristjansdottir, Karin Sundfeldt

Clinical Chemistry and Laboratory Medicine

2021. Artikel. https://doi.org/10.1515/cclm-2021-0510 Open Access

Multi-Assignment Clustering: Machine learning from a biological perspective

Benjamin Ulfenborg, Alexander Karlsson, Maria Riveiro, Christian X. Andersson, Peter Sartipy, Jane Synnergren

Journal of Biotechnology

2021. Artikel. https://doi.org/10.1016/j.jbiotec.2020.12.002 Open Access

Characterization of Human Induced Pluripotent Stem Cell-Derived Hepatocytes with Mature Features and Potential for Modeling Metabolic Diseases

Gustav Holmgren, Benjamin Ulfenborg, Annika Asplund, Karin Toet, Christian X. Andersson, Ann Hammarstedt, Roeland Hanemaaijer, Barbara Küppers-Munther, Jane Synnergren

International Journal of Molecular Sciences

2020. Artikel. https://doi.org/10.3390/ijms21020469 Open Access

Cardiac hypertrophy in a dish: a human stem cell based model

Markus Johansson, Benjamin Ulfenborg, Christian X. Andersson, Sepideh Heydarkhan-Hagvall, Anders Jeppsson, Peter Sartipy, Jane Synnergren

Biology open

2020. Artikel. https://doi.org/10.1242/bio.052381 Open Access

Increased Diagnostic Accuracy of Adnexal Tumors with A Combination of Established Algorithms and Biomarkers

Maria Lycke, Benjamin Ulfenborg, Björg Kristjansdottir, Karin Sundfeldt

Journal of Clinical Medicine

2020. Artikel. https://doi.org/10.3390/jcm9020299 Open Access

Univariate and classification analysis reveals potential diagnostic biomarkers for early stage ovarian cancer Type 1 and Type 2

Simonas Marcišauskas, Benjamin Ulfenborg, Björg Kristjansdottir, Sofia Waldemarson, Karin Sundfeldt

Journal of Proteomics

2019. Artikel. https://doi.org/10.1016/j.jprot.2019.01.017

Vertical and horizontal integration of multi-omics data with miodin

Benjamin Ulfenborg

BMC Bioinformatics

2019. Artikel. https://doi.org/10.1186/s12859-019-3224-4 Open Access

Novel human iPSC-derived hepatocytes with advanced functionality and long-term 2D cultures of human primary hepatocytes for metabolic disease studies

Barbara Küppers-Munther, A. Asplund, Benjamin Ulfenborg, Jane Synnergren, A. Abadie

Human Gene Therapy

2018. Artikel, meeting abstract. https://doi.org/10.1089/hum.2018.29077.abstracts

Comparative transcriptomics of hepatic differentiation of human pluripotent stem cells and adult human liver tissue

Nidal Ghosheh, Barbara Küppers-Munther, Annika Asplund, Josefina Edsbagge, Benjamin Ulfenborg, Tommy B. Andersson, Petter Björquist, Christian X. Andersson, Helena Carén, Stina Simonsson, Peter Sartipy, Jane Synnergren

Physiological Genomics

2017. Artikel. https://doi.org/10.1152/physiolgenomics.00007.2017 Open Access

A data analysis framework for biomedical big data: Application on mesoderm differentiation of human pluripotent stem cells

Benjamin Ulfenborg, Alexander Karlsson, Maria Riveiro, Caroline Améen, Karolina Åkesson, Christian X. Andersson, Peter Sartipy, Jane Synnergren

PLOS ONE

2017. Artikel. https://doi.org/10.1371/journal.pone.0179613 Open Access

Bioinformatics tools for discovery and evaluation of biomarkers: Applications in clinical assessment of cancer

Benjamin Ulfenborg

2016. Doktorsavhandling.

miREC: a database of miRNAs involved in the development of endometrial cancer

Benjamin Ulfenborg, Sanja Jurcevic, Angelica Lindelöf, Karin Klinga-Levan, Björn Olsson

BMC Research Notes